Follow me on twitter Welcome!
17 Nov 2020Welcome to Genomic Data Analysis II. This is an online repository containing all of the materials required to complete MA5112 tutorials.
Topics covered:
- Week 1: Create a Docker container using Anaconda. Pull the container using Singularity & integrate with Nextflow script for quality control analysis.
- Week 2: Perform Exome sequencing analysis via command line, translate to nextflow workflow.
- Week 3: Ask Shane for help here (ATAC/ChIP Seq).
- Week 4: Create RNA-Seq quantification workflow in nextflow, perform Differential Expression analysis in R.
- Week 5: Create scRNA-Seq quantification workflow in nextflow, perform QC and analysis in R.
Lets get started..
